ME 5329 Assignment 2

Assignment 2

Code Block in Instructions

create_dimer_structure.py

import molecule_lib as mlb
monomer_mol = mlb.read_xyz("NUCLEOTIDE.xyz")
dimer_mol = monomer_mol.add_coords(molecule=monomer_mol, 
                    absorbent_reference="Bottom", 
                    surface_reference="Top", 
                    dist=4, 
                    axis="z")
dimer_mol.to_xyz("NUCLEOTIDE_DIMER.xyz")